MolNFT v1 · #29521 · protein
Crystal structure of xylella fastidiosa organic peroxide resistance protein
1ZB9 · Organic hydroperoxide resistance protein: “Crystal structure of xylella fastidiosa organic peroxide resistance protein”. X-ray diffraction, 2 pockets (best druggability 0.47). MolNFT v1 #29521 on GenesisL1: 3D structure, binding…
- PDB
- 1ZB9
- Type
- protein
- Length
- 283 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Organic hydroperoxide resistance protein
- UniProt
- Q9PCF4
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Organic hydroperoxide resistance protein | protein | 142 | 32% helix, 32% strand | Q9PCF4 |
| B | Organic hydroperoxide resistance protein | protein | 141 | 33% helix, 31% strand | Q9PCF4 |
Ligands and binding sites
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.47 | 0.76 | 19 | PE4 |
| 2 | 127 | 0.41 | 0.75 | 18 | PE4 |
Interfaces
1 interface between chains.
- A–B · 2944 Ų buried · 55 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
- 1ZB9 · Crystal structure of Xylella fastidiosa organic peroxide resistance protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PCF4
- Elsewhere: RCSB PDB 1ZB9 · PDBe 1ZB9 · UniProt Q9PCF4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.