MolNFT v1 · #29478 · protein
Structural genomics, the crystal structure of the acetyl transferase, modifies N-terminal serine of 50S ribosomal subunit protein L7/L12 from salmonella typhimurium
1Z9U: “Structural genomics, the crystal structure of the acetyl transferase, modifies N-terminal serine of 50S…”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.73). MolNFT v1 #29478 on GenesisL1: 3D structure, binding…
- PDB
- 1Z9U
- Type
- protein
- Length
- 348 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acetyl transferase
- EC
- 2.3.1.-
- UniProt
- Q8ZPC0
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acetyl transferase (EC 2.3.1.-) | protein | 172 | 35% helix, 38% strand | Q8ZPC0 |
| B | Acetyl transferase (EC 2.3.1.-) | protein | 176 | 35% helix, 37% strand | Q8ZPC0 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 832 | 0.73 | 0.78 | 79 | empty |
| 2 | 166 | 0.58 | 0.82 | 25 | empty |
| 3 | 176 | 0.56 | 0.80 | 29 | SO4 |
Interfaces
1 interface between chains.
- A–B · 903 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 1Z9U · Structural Genomics, The crystal structure of the acetyl transferase, modifies N-terminal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZPC0
- Elsewhere: RCSB PDB 1Z9U · PDBe 1Z9U · UniProt Q8ZPC0
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