MolNFT v1 · #29446 · protein
Structure of mutant pyrrolidone carboxyl peptidase (E192I) from a hyperthermophile, pyrococcus furiosus
1Z8W · Pyrrolidone-carboxylate peptidase: “Structure of mutant pyrrolidone carboxyl peptidase (E192I) from a hyperthermophile, pyrococcus furiosus”. X-ray diffraction, 7 pockets (best druggability 0.76). MolNFT v1 #29446 on GenesisL1: 3D…
- PDB
- 1Z8W
- Type
- protein
- Length
- 832 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyrrolidone-carboxylate peptidase
- EC
- 3.4.19.3
- UniProt
- O73944
- Pockets
- 7 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) | protein | 208 | 36% helix, 24% strand | O73944 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1023 | 0.76 | 0.78 | 74 | empty |
| 2 | 1080 | 0.76 | 0.78 | 78 | empty |
| 3 | 73 | 0.37 | 0.77 | 22 | empty |
| 4 | 57 | 0.31 | 0.76 | 12 | empty |
| 5 | 56 | 0.30 | 0.75 | 15 | empty |
Interfaces
6 interfaces between chains.
- B–D · 703 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 700 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 668 Ų buried · 13 hydrogen bonds · protein-protein
- A–D · 655 Ų buried · 10 hydrogen bonds · protein-protein
- C–D · 128 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 1Z8W · Structure of Mutant Pyrrolidone Carboxyl Peptidase (E192I) from a Hyperthermophile… · the same entry in another collection · chain A against A, TM-score 1.00
- O73944 · AlphaFold monomer V2.0 prediction for pyrrolidone-carboxylate peptidase (O73944) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O73944
- Elsewhere: RCSB PDB 1Z8W · PDBe 1Z8W · UniProt O73944
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