MolNFT v1 · #29272 · protein
Crystal structure of complex between PVS25 and Fab fragment of malaria transmission blocking antibody 2A8
1Z3G · 2A8 Fab light chain: “Crystal structure of complex between PVS25 and Fab fragment of malaria transmission blocking antibody 2A8”. X-ray diffraction, 16 pockets (best druggability 0.70). MolNFT v1 #29272 on GenesisL1: 3D structure…
- PDB
- 1Z3G
- Type
- protein
- Length
- 1,200 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2A8 Fab light chain; 2A8 Fab heavy chain; Ookinete surface protein PVS25
- UniProt
- O96555
- Pockets
- 16 · best druggability 0.70
Structure
x-ray diffraction · 3 distinct chains · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L, M | 2A8 Fab light chain | protein | 213 | 5% helix, 52% strand | — |
| H, I | 2A8 Fab heavy chain | protein | 214 | 6% helix, 46% strand | — |
| A, B | Ookinete surface protein PVS25 | protein | 173 | 5% helix, 32% strand | O96555 |
Pockets
16 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 592 | 0.70 | 0.79 | 63 | empty |
| 2 | 440 | 0.64 | 0.78 | 49 | empty |
| 3 | 346 | 0.64 | 0.79 | 45 | empty |
| 4 | 619 | 0.63 | 0.74 | 66 | empty |
| 5 | 511 | 0.60 | 0.74 | 56 | empty |
Interfaces
9 interfaces between chains.
- L–H · 1786 Ų buried · 16 hydrogen bonds · protein-protein
- M–I · 1685 Ų buried · 12 hydrogen bonds · protein-protein
- I–B · 675 Ų buried · 11 hydrogen bonds · protein-protein
- H–A · 671 Ų buried · 12 hydrogen bonds · protein-protein
- H–I · 433 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 29 disulfide (disulfide).
Compared structures
- 1Z3G · Crystal structure of complex between Pvs25 and Fab fragment of malaria transmission… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O96555
- Elsewhere: RCSB PDB 1Z3G · PDBe 1Z3G · UniProt O96555
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