MolNFT v1 · #29253 · protein
Crystal structure of GLU60 deletion mutant of human acidic fibroblast growth factor
1Z2V · Heparin-binding growth factor 1: “Crystal structure of GLU60 deletion mutant of human acidic fibroblast growth factor”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.37). MolNFT v1 #29253 on GenesisL1: 3D…
- PDB
- 1Z2V
- Type
- protein
- Length
- 280 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heparin-binding growth factor 1
- UniProt
- P05230
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Heparin-binding growth factor 1 | protein | 140 | 6% helix, 36% strand | P05230 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.37 | 0.75 | 20 | empty |
| 2 | 54 | 0.24 | 0.72 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 432 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1Z2V · Crystal Structure of Glu60 deletion Mutant of Human Acidic Fibroblast Growth Factor · the same entry in another collection · chain A against A, TM-score 1.00
- P05230 · AlphaFold monomer V2.0 prediction for fibroblast growth factor 1 (P05230) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05230
- Elsewhere: RCSB PDB 1Z2V · PDBe 1Z2V · UniProt P05230
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