MolNFT v1 · #2916 · protein
The X-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4 methyltransferase, cbif
1CBF · Cobalt-precorrin-4 transmethylase: “The X-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4 methyltransferase, cbif”. X-ray diffraction, 2 ligands (SAH, PO4), 1 pocket (best druggability 0.64). MolNFT v1 #2916 on…
- PDB
- 1CBF
- Type
- protein
- Length
- 239 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cobalt-precorrin-4 transmethylase
- EC
- 2.1.1.133
- UniProt
- O87696
- Ligands
- SAH, PO4
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cobalt-precorrin-4 transmethylase (EC 2.1.1.133) | protein | 239 | 32% helix, 23% strand | O87696 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.64 | 0.81 | 35 | PO4, SAH |
Compared structures
- 1CBF · The X-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4… · the same entry in another collection · chain A against A, TM-score 1.00
- O87696 · AlphaFold monomer V2.0 prediction for cobalt-precorrin-4 C(11)-methyltransferase (O87696) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O87696
- Elsewhere: RCSB PDB 1CBF · PDBe 1CBF · UniProt O87696
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