MolNFT v1 · #29029 · protein
Structure of ytnj from bacillus subtilis in complex with FMN
1YW1 · Protein ytnj: “Structure of ytnj from bacillus subtilis in complex with FMN”. X-ray diffraction, 2 ligands (FMN, GLC), 4 pockets (best druggability 0.65). MolNFT v1 #29029 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1YW1
- Type
- protein
- Length
- 393 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein ytnj
- UniProt
- O34974
- Ligands
- FMN, GLC
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein ytnj | protein | 393 | 41% helix, 14% strand | O34974 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 608 | 0.65 | 0.76 | 60 | GLC, FMN |
| 2 | 103 | 0.39 | 0.76 | 22 | empty |
| 3 | 60 | 0.31 | 0.75 | 13 | empty |
| 4 | 56 | 0.27 | 0.74 | 10 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34974
- Elsewhere: RCSB PDB 1YW1 · PDBe 1YW1 · UniProt O34974
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