MolNFT v1 · #29000 · protein

X-ray structure of (C87S,DES103-104) onconase

1YV7 · P-30 protein: “X-ray structure of (C87S,DES103-104) onconase”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #29000 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1YV7
Type: protein
Length: 102 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: P-30 protein
EC: 3.1.27.-
UniProt: P22069
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	P-30 protein (EC 3.1.27.-)	protein	102	20% helix, 41% strand	P22069

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide, 1 modified (disulfide, cyclization).

Compared structures

1YV7 · X-ray structure of (C87S,des103-104) onconase · the same entry in another collection · chain A against A, TM-score 1.00
P22069 · AlphaFold monomer V2.0 prediction for protein P-30 (P22069) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22069
Elsewhere: RCSB PDB 1YV7 · PDBe 1YV7 · UniProt P22069

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