MolNFT v1 · #28916 · protein
The crystal structure of transcriptional regulator yaij
1YSQ · Hth-type transcriptional regulator yiaj: “The crystal structure of transcriptional regulator yaij”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.65). MolNFT v1 #28916 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1YSQ
- Type
- protein
- Length
- 181 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional regulator yiaj
- UniProt
- P37671
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional regulator yiaj | protein | 181 | 45% helix, 22% strand | P37671 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.65 | 0.83 | 24 | PO4 |
Compared structures
- 1YSQ · The crystal structure of transcriptional regulator YaiJ · the same entry in another collection · chain A against A, TM-score 1.00
- P37671 · AlphaFold monomer V2.0 prediction for DNA-binding transcriptional repressor yiaj (P37671) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37671
- Elsewhere: RCSB PDB 1YSQ · PDBe 1YSQ · UniProt P37671
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