MolNFT v1 · #28891 · protein
Crystal structure of xylan beta-1,4-xylosidase from bacillus halodurans C-125
1YRZ: “Crystal structure of xylan beta-1,4-xylosidase from bacillus halodurans C-125”. X-ray diffraction, 15 pockets (best druggability 0.65). MolNFT v1 #28891 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1YRZ
- Type
- protein
- Length
- 1,044 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylan beta-1,4-xylosidase
- UniProt
- Q9K6P5
- Pockets
- 15 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Xylan beta-1,4-xylosidase | protein | 522 | 1% helix, 49% strand | Q9K6P5 |
Pockets
15 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 315 | 0.65 | 0.80 | 24 | empty |
| 2 | 317 | 0.64 | 0.80 | 27 | empty |
| 3 | 386 | 0.60 | 0.76 | 58 | empty |
| 4 | 163 | 0.59 | 0.82 | 23 | empty |
| 5 | 175 | 0.59 | 0.81 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 524 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1YRZ · Crystal structure of xylan beta-1,4-xylosidase from Bacillus Halodurans C-125 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K6P5
- Elsewhere: RCSB PDB 1YRZ · PDBe 1YRZ · UniProt Q9K6P5
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