MolNFT v1 · #28863 · protein

PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from pyrococcus abyssi

1YR7 · ATP(GTP)BINDING protein: “PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from pyrococcus abyssi”. X-ray diffraction, 1 ligand (GSP), 1 pocket (best druggability 0.55). MolNFT v1 #28863 on GenesisL1: 3D structure…

PDB: 1YR7
Type: protein
Length: 243 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ATP(GTP)BINDING protein
Ligands: GSP
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ATP(GTP)BINDING protein	protein	243	53% helix, 13% strand	—

Ligands and binding sites

GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	124	0.55	0.82	25	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

1YR7 · PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1YR7 · PDBe 1YR7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.