MolNFT v1 · #28827 · protein

PRD1 vertex protein P5

1YQ5 · Minor capsid protein: “PRD1 vertex protein P5”. X-ray diffraction, 1 pocket (best druggability 0.49). MolNFT v1 #28827 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1YQ5
Type: protein
Length: 288 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Minor capsid protein
UniProt: P22536
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Minor capsid protein	protein	144	0% helix, 51% strand	P22536

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	196	0.49	0.76	39	empty

Interfaces

1 interface between chains.

A–B · 362 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

1YQ5 · PRD1 vertex protein P5 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22536
Elsewhere: RCSB PDB 1YQ5 · PDBe 1YQ5 · UniProt P22536

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