MolNFT v1 · #28791 · protein
Crystal structure of a non-hemorrhagic FIBRIN(OGEN)OLYTIC metalloproteinase from venom of agkistrodon acutus
1YP1 · Fii: “Crystal structure of a non-hemorrhagic FIBRIN(OGEN)OLYTIC metalloproteinase from venom of agkistrodon acutus”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #28791 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1YP1
- Type
- protein
- Length
- 202 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fii; Knl
- EC
- 3.4.24.-
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fii (EC 3.4.24.-) | protein | 199 | 39% helix, 18% strand | — |
| B | Knl | protein | 3 | 0% helix, 33% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 355 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1YP1 · Crystal structure of a non-hemorrhagic fibrin(ogen)olytic metalloproteinase from venom of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YP1 · PDBe 1YP1
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