MolNFT v1 · #28771 · protein
Crystal structure of genomics APC5556
1YOC · Hypothetical protein PA1835: “Crystal structure of genomics APC5556”. X-ray diffraction, 3 pockets (best druggability 0.70). MolNFT v1 #28771 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1YOC
- Type
- protein
- Length
- 292 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein PA1835
- UniProt
- Q9I2R0
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein PA1835 | protein | 145 | 34% helix, 39% strand | Q9I2R0 |
| B | Hypothetical protein PA1835 | protein | 147 | 35% helix, 39% strand | Q9I2R0 |
Ligands and binding sites
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 256 | 0.70 | 0.85 | 31 | empty |
| 2 | 186 | 0.69 | 0.87 | 28 | empty |
| 3 | 51 | 0.25 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1256 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 1YOC · Crystal Structure of genomics APC5556 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I2R0
- Elsewhere: RCSB PDB 1YOC · PDBe 1YOC · UniProt Q9I2R0
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