MolNFT v1 · #28735 · protein

Endo-1,4-beta-xylanase, room temperature, pH 4.0

1YNA: “Endo-1,4-beta-xylanase, room temperature, pH 4.0”. X-ray diffraction, 1 pocket (best druggability 0.51). MolNFT v1 #28735 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1YNA
Type: protein
Length: 194 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-1,4-beta-xylanase
EC: 3.2.1.8
UniProt: O43097
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 63% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-1,4-beta-xylanase (EC 3.2.1.8)	protein	194	5% helix, 63% strand	O43097

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	213	0.51	0.76	31	empty

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, cyclization).

Compared structures

1YNA · Endo-1,4-beta-xylanase, room temperature, pH 4.0 · the same entry in another collection · chain A against A, TM-score 1.00
O43097 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase (O43097) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O43097
Elsewhere: RCSB PDB 1YNA · PDBe 1YNA · UniProt O43097

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