MolNFT v1 · #28691 · protein
Crystal structure of a protein of unknown function from bacillus stearothermophilus
1YLX · Hypothetical protein APC35702: “Crystal structure of a protein of unknown function from bacillus stearothermophilus”. X-ray diffraction, 6 pockets (best druggability 0.52). MolNFT v1 #28691 on GenesisL1: 3D structure, binding sites…
- PDB
- 1YLX
- Type
- protein
- Length
- 200 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein APC35702
- Pockets
- 6 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein APC35702 | protein | 100 | 28% helix, 43% strand | — |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.52 | 0.80 | 28 | empty |
| 2 | 121 | 0.48 | 0.80 | 26 | empty |
| 3 | 102 | 0.34 | 0.73 | 22 | empty |
| 4 | 67 | 0.32 | 0.75 | 17 | empty |
| 5 | 60 | 0.28 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 975 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 1YLX · Crystal Structure of a Protein of Unknown Function from Bacillus stearothermophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YLX · PDBe 1YLX
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