MolNFT v1 · #28684 · protein
Crystal structure of putative nucleotidyltransferase
1YLQ · Putative nucleotidyltransferase, hypothetical protein AF0614: “Crystal structure of putative nucleotidyltransferase”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.34). MolNFT v1 #28684 on GenesisL1: 3D…
- PDB
- 1YLQ
- Type
- protein
- Length
- 186 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative nucleotidyltransferase, hypothetical protein AF0614
- UniProt
- O29641
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative nucleotidyltransferase, hypothetical protein AF0614 | protein | 93 | 45% helix, 20% strand | O29641 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.34 | 0.76 | 14 | empty |
| 2 | 55 | 0.31 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 847 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1YLQ · Crystal structure of putative nucleotidyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29641
- Elsewhere: RCSB PDB 1YLQ · PDBe 1YLQ · UniProt O29641
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