MolNFT v1 · #28673 · protein
X-ray crystal structure of BC1842 protein from bacillus cereus, a member of the RRF2 family of putative transcription regulators.
1YLF · RRF2 family protein: “X-ray crystal structure of BC1842 protein from bacillus cereus, a member of the RRF2 family of putative…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.37). MolNFT v1 #28673 on GenesisL1: 3D…
- PDB
- 1YLF
- Type
- protein
- Length
- 354 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RRF2 family protein
- UniProt
- Q81EX1
- Ligands
- CL
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 3 distinct chains · 67% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RRF2 family protein | protein | 117 | 70% helix, 7% strand | Q81EX1 |
| B | RRF2 family protein | protein | 118 | 66% helix, 8% strand | Q81EX1 |
| C | RRF2 family protein | protein | 119 | 65% helix, 7% strand | Q81EX1 |
Ligands and binding sites
- CL · Chloride ion · ion · 5 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.37 | 0.78 | 18 | empty |
| 2 | 57 | 0.27 | 0.72 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–B · 382 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 379 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 269 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 1YLF · X-ray crystal structure of BC1842 protein from Bacillus cereus, a member of the Rrf2… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81EX1
- Elsewhere: RCSB PDB 1YLF · PDBe 1YLF · UniProt Q81EX1
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