MolNFT v1 · #2867 · protein
Crystal structure analysis of the bacillus caldolyticus cold shock protein bc-csp
1C9O · Cold-shock protein: “Crystal structure analysis of the bacillus caldolyticus cold shock protein bc-csp”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.56). MolNFT v1 #2867 on GenesisL1: 3D structure, binding sites…
- PDB
- 1C9O
- Type
- protein
- Length
- 132 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cold-shock protein
- UniProt
- P41016
- Ligands
- NA
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cold-shock protein | protein | 66 | 5% helix, 62% strand | P41016 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 155 | 0.56 | 0.82 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 454 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1C9O · Crystal structure analysis of the bacillus caldolyticus cold shock protein bc-csp · the same entry in another collection · chain A against A, TM-score 1.00
- P41016 · AlphaFold monomer V2.0 prediction for cold shock protein cspb (P41016) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41016
- Elsewhere: RCSB PDB 1C9O · PDBe 1C9O · UniProt P41016
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