MolNFT v1 · #28609 · protein
Crystal structure of cimex nitrophorin ferrous no complex
1YJH · Salivary nitrophorin: “Crystal structure of cimex nitrophorin ferrous no complex”. X-ray diffraction, 2 ligands (HEM, NO), 2 pockets (best druggability 0.72). MolNFT v1 #28609 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1YJH
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Salivary nitrophorin
- Ligands
- HEM, NO
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Salivary nitrophorin | protein | 280 | 15% helix, 34% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.72 | 0.86 | 35 | NO, HEM |
| 2 | 83 | 0.33 | 0.74 | 17 | empty |
Compared structures
- 1YJH · Crystal Structure of Cimex Nitrophorin Ferrous NO Complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YJH · PDBe 1YJH
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