MolNFT v1 · #28594 · protein
Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant
1YJ2 · Green fluorescent protein: “Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant”. X-ray diffraction, 2 ligands (CRX, MG), 1 pocket (best druggability 0.74). MolNFT v1 #28594 on GenesisL1: 3D…
- PDB
- 1YJ2
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- Ligands
- CRX, MG
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 223 | 12% helix, 52% strand | — |
Ligands and binding sites
- CRX · [2-(1-aminoethyl)-2-hydroxy-4-methylene-5-oxoimidazolidin-1-yl]acetic acid · ligand · chains A
- MG · Magnesium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.74 | 0.96 | 28 | CRX, EDO |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 1YJ2 · Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YJ2 · PDBe 1YJ2
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