MolNFT v1 · #28469 · protein

Cyto-epsl: the cytoplasmic domain of epsl, an inner membrane component of the type II secretion system of vibrio cholerae

1YF5 · General secretion pathway protein L: “Cyto-epsl: the cytoplasmic domain of epsl, an inner membrane component of the type II secretion system of…”. X-ray diffraction, 2 pockets (best druggability 0.33). MolNFT v1 #28469 on GenesisL1…

PDB: 1YF5
Type: protein
Length: 238 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: General secretion pathway protein L
UniProt: P45782
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	General secretion pathway protein L	protein	238	31% helix, 34% strand	P45782

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.33	0.74	22	empty
2	66	0.29	0.74	15	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

1YF5 · Cyto-Epsl: The Cytoplasmic Domain Of Epsl, An Inner Membrane Component Of The Type II… · the same entry in another collection · chain L against L, TM-score 1.00
P45782 · AlphaFold monomer V2.0 prediction for type II secretion system protein L (P45782) · a predicted model of the same protein · chain L against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P45782
Elsewhere: RCSB PDB 1YF5 · PDBe 1YF5 · UniProt P45782

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