MolNFT v1 · #28400 · protein
Crystal structure of the giy-yig N-terminal endonuclease domain of uvrc from thermotoga maritima: point mutant N88A bound to its catalytic divalent cation
1YD5 · Uvrabc system protein C: “Crystal structure of the giy-yig N-terminal endonuclease domain of uvrc from thermotoga maritima: point…”. X-ray diffraction, 1 ligand (MN). MolNFT v1 #28400 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1YD5
- Type
- protein
- Length
- 90 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uvrabc system protein C
- UniProt
- Q9WYA3
- Ligands
- MN
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uvrabc system protein C | protein | 90 | 47% helix, 23% strand | Q9WYA3 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1YD5 · Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9WYA3 · AlphaFold monomer V2.0 prediction for uvrabc system protein C (Q9WYA3) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WYA3
- Elsewhere: RCSB PDB 1YD5 · PDBe 1YD5 · UniProt Q9WYA3
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