MolNFT v1 · #28383 · protein
Crystal structure of B. subtilis luxs in complex with a catalytic 2- ketone intermediate
1YCL · S-ribosylhomocysteinase: “Crystal structure of B. subtilis luxs in complex with a catalytic 2- ketone intermediate”. X-ray diffraction, 3 ligands (KRI, CO, SO4). MolNFT v1 #28383 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1YCL
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S-ribosylhomocysteinase
- EC
- 3.13.1.-
- UniProt
- O34667
- Ligands
- KRI, CO, SO4
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S-ribosylhomocysteinase (EC 3.13.1.-) | protein | 154 | 35% helix, 23% strand | O34667 |
Ligands and binding sites
- KRI · (S)-2-amino-4-[(2S,3R)-2,3,5-trihydroxy-4-oxo-pentyl]mercapto-butyric acid · ligand · chains A
- CO · Cobalt (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1YCL · Crystal Structure of B. subtilis LuxS in Complex with a Catalytic 2-Ketone Intermediate · the same entry in another collection · chain A against A, TM-score 1.00
- O34667 · AlphaFold monomer V2.0 prediction for S-ribosylhomocysteine lyase (O34667) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34667
- Elsewhere: RCSB PDB 1YCL · PDBe 1YCL · UniProt O34667
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