MolNFT v1 · #28371 · protein

The crystal structure of the outer membrane protein vcec from the bacterial pathogen vibrio cholerae at 1.8 resolution

1YC9 · Multidrug resistance protein: “The crystal structure of the outer membrane protein vcec from the bacterial pathogen vibrio cholerae at 1.8…”. X-ray diffraction, 1 ligand (HG), 4 pockets (best druggability 0.37). MolNFT v1 #28371 on…

PDB: 1YC9
Type: protein
Length: 411 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Multidrug resistance protein
UniProt: Q9KS51
Ligands: HG
Pockets: 4 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Multidrug resistance protein	protein	411	68% helix, 12% strand	Q9KS51

Ligands and binding sites

HG · Mercury (II) ion · metal · 2 copies · chains A
BOG · octyl beta-D-glucopyranoside · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.37	0.74	14	empty
2	60	0.37	0.78	14	empty
3	66	0.34	0.77	15	empty
4	73	0.31	0.73	14	empty

Compared structures

1YC9 · The crystal structure of the outer membrane protein VceC from the bacterial pathogen… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KS51
Elsewhere: RCSB PDB 1YC9 · PDBe 1YC9 · UniProt Q9KS51

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