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MolNFT v1 · #28337 · protein

Hydroxynitrile lyase from hevea brasiliensis in complex with 2,3- dimethyl-2-hydroxy-butyronitrile

1YB7 · (S)-acetone-cyanohydrin lyase: “Hydroxynitrile lyase from hevea brasiliensis in complex with 2,3- dimethyl-2-hydroxy-butyronitrile”. X-ray diffraction, 2 ligands (ICN, SO4). MolNFT v1 #28337 on GenesisL1: 3D structure, binding sites…

PDB
1YB7
Type
protein
Length
256 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
(S)-acetone-cyanohydrin lyase
EC
4.1.2.39
UniProt
P52704
Ligands
ICN, SO4

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A(S)-acetone-cyanohydrin lyase (EC 4.1.2.39)protein25641% helix, 19% strandP52704

Ligands and binding sites

  • ICN · (S)-2-hydroxy-2,3-dimethylbutanenitrile · ligand · chains A
  • SO4 · Sulfate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 1YB7 · Hydroxynitrile lyase from hevea brasiliensis in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
  • P52704 · AlphaFold monomer V2.0 prediction for (S)-hydroxynitrile lyase (P52704) · a predicted model of the same protein · chain A against A, TM-score 1.00

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