MolNFT v1 · #28333 · protein

Conserved hypothetical protein pfu-178653-001 from pyrococcus furiosus

1YB3: “Conserved hypothetical protein pfu-178653-001 from pyrococcus furiosus”. X-ray diffraction, 1 ligand (UNX), 1 pocket (best druggability 0.57). MolNFT v1 #28333 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1YB3
Type: protein
Length: 166 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q8U4C0
Ligands: UNX
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	166	39% helix, 31% strand	Q8U4C0

Ligands and binding sites

UNX · Unknown atom or ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	207	0.57	0.79	39	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

1YB3 · Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8U4C0
Elsewhere: RCSB PDB 1YB3 · PDBe 1YB3 · UniProt Q8U4C0

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