MolNFT v1 · #28247 · DNA

Dimeric parallel-stranded tetraplex with 3+1 5' G-tetrad interface, single-residue chain reversal loops and gag triad in the context of A(GGGG) pentad

1Y8D · 5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*GP*T)-3': “Dimeric parallel-stranded tetraplex with 3+1 5' G-tetrad interface, single-residue chain reversal loops and…”. Solution nmr. MolNFT v1 #28247 on GenesisL1: 3D structure…

PDB: 1Y8D
Type: DNA
Length: 32 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*GP*T)-3'

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(GPGPGPGPTPGPGPGPAPGPGPAPGPGPGPT)-3'	dna	16	—	—

Interfaces

1 interface between chains.

A–B · 548 Å² buried · 26 hydrogen bonds · nucleic-nucleic

Compared structures

1Y8D · Dimeric parallel-stranded tetraplex with 3+1 5' G-tetrad interface, single-residue chain… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1Y8D · PDBe 1Y8D

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