MolNFT v1 · #28235 · protein
Structure of a corrinoid (factor iiim)-binding protein from moorella thermoacetica
1Y80 · Predicted cobalamin binding protein: “Structure of a corrinoid (factor iiim)-binding protein from moorella thermoacetica”. X-ray diffraction, 2 ligands (B1M, UNX), 1 pocket (best druggability 0.60). MolNFT v1 #28235 on GenesisL1: 3D…
- PDB
- 1Y80
- Type
- protein
- Length
- 125 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted cobalamin binding protein
- Ligands
- B1M, UNX
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted cobalamin binding protein | protein | 125 | 47% helix, 19% strand | — |
Ligands and binding sites
- B1M · Co-5-methoxybenzimidazolylcobamide · ligand · chains A
- UNX · Unknown atom or ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.60 | 0.87 | 22 | empty |
Compared structures
- 1Y80 · Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1Y80 · PDBe 1Y80
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