MolNFT v1 · #28053 · RNA
A-riboswitch-adenine complex
1Y26 · Vibrio vulnificus a-riboswitch: “A-riboswitch-adenine complex”. X-ray diffraction, 2 ligands (ADE, MG), 1 pocket (best druggability 0.69). MolNFT v1 #28053 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1Y26
- Type
- RNA
- Length
- 71 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vibrio vulnificus a-riboswitch
- Ligands
- ADE, MG
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Vibrio vulnificus a-riboswitch | rna | 71 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1068 | 0.69 | 0.75 | 57 | MG, ADE |
Compared structures
- 1Y26 · A-riboswitch-adenine complex · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1Y26 · PDBe 1Y26
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