MolNFT v1 · #28041 · protein
Crystal structure of the uridine phosphorylase from salmonella typhimurium at 1.77A resolution
1Y1T: “Crystal structure of the uridine phosphorylase from salmonella typhimurium at 1.77A resolution”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.70). MolNFT v1 #28041 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1Y1T
- Type
- protein
- Length
- 468 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uridine phosphorylase
- EC
- 2.4.2.3
- UniProt
- P0A1F6
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uridine phosphorylase (EC 2.4.2.3) | protein | 250 | 33% helix, 28% strand | P0A1F6 |
| F | Uridine phosphorylase (EC 2.4.2.3) | protein | 218 | 33% helix, 32% strand | P0A1F6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 501 | 0.70 | 0.80 | 50 | SO4 |
| 2 | 237 | 0.55 | 0.78 | 32 | empty |
Interfaces
1 interface between chains.
- A–F · 1474 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 1Y1T · Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.77A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A1F6
- Elsewhere: RCSB PDB 1Y1T · PDBe 1Y1T · UniProt P0A1F6
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