MolNFT v1 · #27927 · protein
Endo-1,4-beta-xylanase from streptomyces olivaceoviridis
1XYF: “Endo-1,4-beta-xylanase from streptomyces olivaceoviridis”. X-ray diffraction, 4 pockets (best druggability 0.67). MolNFT v1 #27927 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1XYF
- Type
- protein
- Length
- 854 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase
- EC
- 3.2.1.8
- UniProt
- Q7SI98
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 427 | 32% helix, 24% strand | Q7SI98 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 394 | 0.67 | 0.80 | 52 | empty |
| 2 | 69 | 0.32 | 0.75 | 18 | empty |
| 3 | 54 | 0.32 | 0.77 | 15 | empty |
| 4 | 52 | 0.27 | 0.74 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 1049 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 disulfide (disulfide).
Compared structures
- 1XYF · Endo-1,4-beta-xylanase from streptomyces olivaceoviridis · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SI98
- Elsewhere: RCSB PDB 1XYF · PDBe 1XYF · UniProt Q7SI98
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