MolNFT v1 · #27919 · protein

X-ray structure of gene product from arabidopsis thaliana AT5G48480

1XY7 · Unknown protein: “X-ray structure of gene product from arabidopsis thaliana AT5G48480”. X-ray diffraction, 3 pockets (best druggability 0.38). MolNFT v1 #27919 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1XY7
Type: protein
Length: 242 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Unknown protein
UniProt: Q9LV66
Pockets: 3 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 25% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Unknown protein	protein	120	25% helix, 36% strand	Q9LV66
B	Unknown protein	protein	122	25% helix, 38% strand	Q9LV66

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.38	0.76	18	empty
2	69	0.36	0.76	13	empty
3	77	0.31	0.74	16	empty

Interfaces

1 interface between chains.

A–B · 2005 Å² buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

1XY7 · X-ray structure of gene product from arabidopsis thaliana AT5G48480 · the same entry in another collection · chain A against A, TM-score 1.00
Q9LV66 · AlphaFold monomer V2.0 prediction for uncharacterized protein AT5G48480 (Q9LV66) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LV66
Elsewhere: RCSB PDB 1XY7 · PDBe 1XY7 · UniProt Q9LV66

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