MolNFT v1 · #27882 · protein
Crystal structure of rat mitochondrial 3,2-enoyl-CoA
1XX4 · 3,2-trans-enoyl-CoA isomerase, mitochondrial: “Crystal structure of rat mitochondrial 3,2-enoyl-CoA”. X-ray diffraction, 3 ligands (BEN, ZN, PO4), 2 pockets (best druggability 0.68). MolNFT v1 #27882 on GenesisL1: 3D structure…
- PDB
- 1XX4
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3,2-trans-enoyl-CoA isomerase, mitochondrial
- EC
- 5.3.3.8
- UniProt
- P23965
- Ligands
- BEN, ZN, PO4
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3,2-trans-enoyl-CoA isomerase, mitochondrial (EC 5.3.3.8) | protein | 254 | 55% helix, 17% strand | P23965 |
Ligands and binding sites
- BEN · Benzamidine · ligand · 3 copies · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.68 | 0.86 | 31 | BEN |
| 2 | 77 | 0.33 | 0.75 | 15 | empty |
Compared structures
- 1XX4 · Crystal Structure of Rat Mitochondrial 3,2-Enoyl-CoA · the same entry in another collection · chain A against A, TM-score 1.00
- P23965 · AlphaFold monomer V2.0 prediction for enoyl-CoA delta isomerase 1, mitochondrial (P23965) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23965
- Elsewhere: RCSB PDB 1XX4 · PDBe 1XX4 · UniProt P23965
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