MolNFT v1 · #27855 · protein

Drospohila thioredoxin, oxidized, P42212

1XWB: “Drospohila thioredoxin, oxidized, P42212”. X-ray diffraction, 1 ligand (CD). MolNFT v1 #27855 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1XWB
Type: protein
Length: 424 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thioredoxin
UniProt: Q9V429
Ligands: CD

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Thioredoxin	protein	106	41% helix, 28% strand	Q9V429

Ligands and binding sites

CD · Cadmium ion · metal · 3 copies · chains A, B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

C–D · 641 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1XWB · Drospohila thioredoxin, oxidized, P42212 · the same entry in another collection · chain A against A, TM-score 1.00
Q9V429 · AlphaFold monomer V2.0 prediction for thioredoxin-2 (Q9V429) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9V429
Elsewhere: RCSB PDB 1XWB · PDBe 1XWB · UniProt Q9V429

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