MolNFT v1 · #27721 · protein
The crystal structure of lipoprotein TP32 from treponema pallidum
1XS5 · Membrane lipoprotein TPN32: “The crystal structure of lipoprotein TP32 from treponema pallidum”. X-ray diffraction, 1 ligand (MET), 1 pocket (best druggability 0.33). MolNFT v1 #27721 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1XS5
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane lipoprotein TPN32
- UniProt
- O07950
- Ligands
- MET
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane lipoprotein TPN32 | protein | 240 | 39% helix, 25% strand | O07950 |
Ligands and binding sites
- MET · Methionine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.33 | 0.76 | 19 | empty |
Compared structures
- 1XS5 · The Crystal Structure of Lipoprotein Tp32 from Treponema pallidum · the same entry in another collection · chain A against A, TM-score 1.00
- O07950 · AlphaFold monomer V2.0 prediction for membrane lipoprotein TPN32 (O07950) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O07950
- Elsewhere: RCSB PDB 1XS5 · PDBe 1XS5 · UniProt O07950
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