MolNFT v1 · #27615 · protein
Crystal structure of endonuclease IV (BA4508) from bacillus anthracis at 2.57A resolution.
1XP3: “Crystal structure of endonuclease IV (BA4508) from bacillus anthracis at 2.57A resolution.”. X-ray diffraction, 2 ligands (ZN, SO4), 1 pocket (best druggability 0.39). MolNFT v1 #27615 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1XP3
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endonuclease IV
- EC
- 3.1.21.2
- UniProt
- Q81LV1
- Ligands
- ZN, SO4
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endonuclease IV (EC 3.1.21.2) | protein | 297 | 41% helix, 15% strand | Q81LV1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.39 | 0.74 | 20 | ZN, SO4 |
Compared structures
- 1XP3 · Crystal Structure of Endonuclease IV (BA4508) from Bacillus anthracis at 2.57A Resolution. · the same entry in another collection · chain A against A, TM-score 1.00
- Q81LV1 · AlphaFold monomer V2.0 prediction for probable endonuclease 4 (Q81LV1) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81LV1
- Elsewhere: RCSB PDB 1XP3 · PDBe 1XP3 · UniProt Q81LV1
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