MolNFT v1 · #27608 · protein

The crystal structure of the listeria monocytogenes bacteriophage psa endolysin plypsa

1XOV · Ply protein: “The crystal structure of the listeria monocytogenes bacteriophage psa endolysin plypsa”. X-ray diffraction, 3 ligands (ZN, SO4, CL), 2 pockets (best druggability 0.52). MolNFT v1 #27608 on GenesisL1: 3D structure…

PDB: 1XOV
Type: protein
Length: 317 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ply protein
EC: 3.5.1.28
UniProt: Q8W5Y8
Ligands: ZN, SO4, CL
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ply protein (EC 3.5.1.28)	protein	317	27% helix, 36% strand	Q8W5Y8

Ligands and binding sites

ZN · Zinc ion · metal · chains A
SO4 · Sulfate ion · ion · chains A
CL · Chloride ion · ion · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.52	0.85	19	empty
2	68	0.30	0.74	15	empty

Compared structures

1XOV · The crystal structure of the listeria monocytogenes bacteriophage PSA endolysin PlyPSA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8W5Y8
Elsewhere: RCSB PDB 1XOV · PDBe 1XOV · UniProt Q8W5Y8

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