MolNFT v1 · #27506 · protein
Crystal structure of reduced C73S putidaredoxin from pseudomonas putida
1XLQ: “Crystal structure of reduced C73S putidaredoxin from pseudomonas putida”. X-ray diffraction, 1 ligand (FES), 3 pockets (best druggability 0.80). MolNFT v1 #27506 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1XLQ
- Type
- protein
- Length
- 318 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putidaredoxin
- EC
- 1.9.3.2
- UniProt
- P00259
- Ligands
- FES
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Putidaredoxin (EC 1.9.3.2) | protein | 106 | 22% helix, 22% strand | P00259 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.80 | 0.99 | 28 | empty |
| 2 | 110 | 0.42 | 0.77 | 19 | empty |
| 3 | 55 | 0.26 | 0.73 | 18 | empty |
Interfaces
2 interfaces between chains.
- A–B · 738 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 496 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00259
- Elsewhere: RCSB PDB 1XLQ · PDBe 1XLQ · UniProt P00259
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.