MolNFT v1 · #27462 · protein

Crystal structure of human tear LIPOCALIN/VON ebners gland protein

1XKI · Von EBNER'S gland protein: “Crystal structure of human tear LIPOCALIN/VON ebners gland protein”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.69). MolNFT v1 #27462 on GenesisL1: 3D structure, binding sites…

PDB: 1XKI
Type: protein
Length: 128 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Von EBNER'S gland protein
UniProt: P31025
Ligands: ZN, CL
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Von EBNER'S gland protein	protein	128	10% helix, 45% strand	P31025

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	372	0.69	0.82	43	empty

Compared structures

1XKI · Crystal structure of human tear lipocalin/von Ebners gland protein · the same entry in another collection · chain A against A, TM-score 1.00
P31025 · AlphaFold monomer V2.0 prediction for lipocalin-1 (P31025) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P31025
Elsewhere: RCSB PDB 1XKI · PDBe 1XKI · UniProt P31025

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