MolNFT v1 · #27442 · DNA
The crystal structures of the DNA binding sites of the RUNX1 transcription factor
1XJX · 5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3': “The crystal structures of the DNA binding sites of the RUNX1 transcription factor”. X-ray diffraction. MolNFT v1 #27442 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1XJX
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3'; 5'-D(*TP*GP*AP*CP*CP*GP*CP*AP*G)-3'
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3' | dna | 8 | — | — |
| B | 5'-D(*TP*GP*AP*CP*CP*GP*CP*AP*G)-3' | dna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 394 Ų buried · 43 hydrogen bonds · nucleic-nucleic
Compared structures
- 1XJX · The crystal structures of the DNA binding sites of the RUNX1 transcription factor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1XJX · PDBe 1XJX
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