MolNFT v1 · #27436 · RNA

The structure of a rigorously conserved RNA element within the SARS virus genome

1XJR · S2M RNA: “The structure of a rigorously conserved RNA element within the SARS virus genome”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.51). MolNFT v1 #27436 on GenesisL1: 3D structure, binding sites and…

PDB: 1XJR
Type: RNA
Length: 47 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: S2M RNA
Ligands: MG
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	S2M RNA	rna	47	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	264	0.51	0.76	18	empty
2	117	0.43	0.78	15	MG

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

1XJR · The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1XJR · PDBe 1XJR

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