MolNFT v1 · #27305 · protein

Solution structure of the bombyx mori pheromone-binding protein fragment BMPBP(1-128) at pH 6.5

1XFR: “Solution structure of the bombyx mori pheromone-binding protein fragment BMPBP(1-128) at pH 6.5”. Solution nmr, 1 pocket (best druggability 0.80). MolNFT v1 #27305 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1XFR
Type: protein
Length: 128 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pheromone-binding protein
UniProt: P34174
Pockets: 1 · best druggability 0.80

Structure

solution nmr · 1 distinct chain · 66% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pheromone-binding protein	protein	128	66% helix, 0% strand	P34174

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	366	0.80	0.89	40	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1XFR · Solution structure of the Bombyx mori pheromone-binding protein fragment BmPBP(1-128) at… · the same entry in another collection · chain A against A, TM-score 1.00
P34174 · AlphaFold monomer V2.0 prediction for pheromone-binding protein (P34174) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P34174
Elsewhere: RCSB PDB 1XFR · PDBe 1XFR · UniProt P34174

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