MolNFT v1 · #27301 · protein

NMR structure of the ground state of the photoactive yellow protein lacking the N-terminal part

1XFN: “NMR structure of the ground state of the photoactive yellow protein lacking the N-terminal part”. Solution nmr, 1 ligand (HC4), 1 pocket (best druggability 0.68). MolNFT v1 #27301 on GenesisL1: 3D structure, binding sites and…

PDB: 1XFN
Type: protein
Length: 100 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photoactive yellow protein
UniProt: P16113
Ligands: HC4
Pockets: 1 · best druggability 0.68

Structure

solution nmr · 1 distinct chain · 15% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photoactive yellow protein	protein	100	15% helix, 33% strand	P16113

Ligands and binding sites

HC4 · 4'-hydroxycinnamic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	125	0.68	0.89	25	HC4

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

1XFN · NMR structure of the ground state of the photoactive yellow protein lacking the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P16113
Elsewhere: RCSB PDB 1XFN · PDBe 1XFN · UniProt P16113

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