MolNFT v1 · #27287 · protein

Crystal structure of weissella viridescens femx (Y254F) mutant

1XF8: “Crystal structure of weissella viridescens femx (Y254F) mutant”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.65). MolNFT v1 #27287 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1XF8
Type: protein
Length: 335 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Femx
EC: 2.3.2.10
UniProt: Q9EY50
Ligands: MG
Pockets: 3 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Femx (EC 2.3.2.10)	protein	335	36% helix, 27% strand	Q9EY50

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	593	0.65	0.75	68	empty
2	130	0.55	0.82	25	empty
3	58	0.39	0.80	14	empty

Compared structures

1XF8 · Crystal Structure of Weissella viridescens FemX (Y254F) Mutant · the same entry in another collection · chain A against A, TM-score 1.00
Q9EY50 · AlphaFold monomer V2.0 prediction for udp-N- acetylmuramoylpentapeptide-lysine… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9EY50
Elsewhere: RCSB PDB 1XF8 · PDBe 1XF8 · UniProt Q9EY50

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