MolNFT v1 · #27266 · protein
High resolution crystal structure of escherichia COLI iron- peptide deformylase bound to formate
1XEN: “High resolution crystal structure of escherichia COLI iron- peptide deformylase bound to formate”. X-ray diffraction, 1 ligand (FE), 1 pocket (best druggability 0.49). MolNFT v1 #27266 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1XEN
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide deformylase
- EC
- 3.5.1.88
- UniProt
- P0A6K3
- Ligands
- FE
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide deformylase (EC 3.5.1.88) | protein | 165 | 36% helix, 24% strand | P0A6K3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.49 | 0.81 | 18 | FE, FMT |
Compared structures
- 1XEN · High Resolution Crystal Structure of Escherichia coli Iron- Peptide Deformylase Bound To… · the same entry in another collection · chain A against A, TM-score 1.00
- P0A6K3 · AlphaFold monomer V2.0 prediction for peptide deformylase (P0A6K3) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6K3
- Elsewhere: RCSB PDB 1XEN · PDBe 1XEN · UniProt P0A6K3
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