MolNFT v1 · #2726 · protein

The structure of tolb, an essential component of the tol- dependent translocation system and its interactions with the translocation domain of colicin E9

1C5K · Protein (tolb protein): “The structure of tolb, an essential component of the tol- dependent translocation system and its interactions…”. X-ray diffraction, 1 ligand (YB), 3 pockets (best druggability 0.77). MolNFT v1 #2726 on…

PDB: 1C5K
Type: protein
Length: 397 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (tolb protein)
UniProt: P0A855
Ligands: YB
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (tolb protein)	protein	397	10% helix, 45% strand	P0A855

Ligands and binding sites

YB · Ytterbium (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	481	0.77	0.85	48	YB
2	67	0.39	0.79	15	empty
3	72	0.36	0.77	17	empty

Compared structures

1C5K · The structure of tolb, an essential component of the tol-dependent translocation system… · the same entry in another collection · chain A against A, TM-score 1.00
P0A855 · AlphaFold monomer V2.0 prediction for tol-pal system protein tolb (P0A855) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A855
Elsewhere: RCSB PDB 1C5K · PDBe 1C5K · UniProt P0A855

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