MolNFT v1 · #2721 · protein

Bacteriophage lambda head protein D

1C5E · Head decoration protein: “Bacteriophage lambda head protein D”. X-ray diffraction, 2 pockets (best druggability 0.61). MolNFT v1 #2721 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1C5E
Type: protein
Length: 285 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Head decoration protein
UniProt: P03712
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Head decoration protein	protein	95	5% helix, 35% strand	P03712

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.61	0.89	21	empty
2	365	0.59	0.76	45	empty

Interfaces

3 interfaces between chains.

A–C · 659 Å² buried · 6 hydrogen bonds · protein-protein
B–C · 658 Å² buried · 5 hydrogen bonds · protein-protein
A–B · 650 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

1C5E · Bacteriophage lambda head protein D · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03712
Elsewhere: RCSB PDB 1C5E · PDBe 1C5E · UniProt P03712

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