MolNFT v1 · #27013 · DNA
Solution structure of the DNA duplex TGCGCA:TGCGCA capped by trimethoxystilbene residues
1X6W · 5'-D(*(TMS)P*TP*GP*CP*GP*CP*A)-3': “Solution structure of the DNA duplex TGCGCA:TGCGCA capped by trimethoxystilbene residues”. Solution nmr, 1 ligand (TMS). MolNFT v1 #27013 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1X6W
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*(TMS)P*TP*GP*CP*GP*CP*A)-3'
- Ligands
- TMS
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*(TMS)P*TP*GP*CP*GP*CP*A)-3' | dna | 6 | — | — |
Ligands and binding sites
- TMS · N-propyl-4-[(E)-2-(3,4,5-trimethoxy-phenyl)-vinyl]-benzamide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 315 Ų buried · 35 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 1X6W · Solution Structure of the DNA Duplex TGCGCA:TGCGCA Capped by Trimethoxystilbene Residues · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1X6W · PDBe 1X6W
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.