MolNFT v1 · #26902 · protein
Crystal structure of the PH0495 protein from pyrococccus horikoshii OT3
1X3L · Hypothetical protein PH0495: “Crystal structure of the PH0495 protein from pyrococccus horikoshii OT3”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.50). MolNFT v1 #26902 on GenesisL1: 3D structure, binding…
- PDB
- 1X3L
- Type
- protein
- Length
- 436 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein PH0495
- EC
- 2.7.1.31
- UniProt
- O58231
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein PH0495 (EC 2.7.1.31) | protein | 436 | 38% helix, 21% strand | O58231 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 211 | 0.50 | 0.76 | 28 | SO4 |
| 2 | 90 | 0.42 | 0.79 | 18 | empty |
Compared structures
- 1X3L · Crystal structure of the PH0495 protein from pyrococccus horikoshii OT3 · the same entry in another collection · chain A against A, TM-score 1.00
- O58231 · AlphaFold monomer V2.0 prediction for glycerate 2-kinase (O58231) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58231
- Elsewhere: RCSB PDB 1X3L · PDBe 1X3L · UniProt O58231
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